Data

3 days injured in vivo ASCs proteome

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PXD023656

Zeng W et al. 2022. Nat Commun. CPEB1 directs muscle stem cell activation by reprogramming the translational landscape.

A Long Noncoding RNA, LncMyod, Regulates Myogenic Lineage Progression by Modulating Chromatin Accessibility

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GSE129768

Dong A et al. 2020. Proc Natl Acad Sci U S A. A long noncoding RNA, LncMyoD, modulates chromatin accessibility to regulate muscle stem cell myogenic lineage progression.

AIN-1 and AIN-2::GFP IP of C.elegans miRNA targets

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GSE9073

Zhang L et al. 2007. Mol Cell. Systematic identification of C. elegans miRISC proteins, miRNAs, and mRNA targets by their interactions with GW182 proteins AIN-1 and AIN-2.

ASCs (Input c57) RNA-seq

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GSM2893686

Chen F et al. 2019. The EMBO Journal. YY1 regulates skeletal muscle regeneration through controlling metabolic reprogramming of satellite cells.

ASCs (WT) RNA-seq

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GSM2893683

Chen F et al. 2019. The EMBO Journal. YY1 regulates skeletal muscle regeneration through controlling metabolic reprogramming of satellite cells.

ASCs (YY1) RNA-seq

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GSM2893685

Chen F et al. 2019. The EMBO Journal. YY1 regulates skeletal muscle regeneration through controlling metabolic reprogramming of satellite cells.

ASCs (YY1iKO) RNA-seq

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GSM2893684

Chen F et al. 2019. The EMBO Journal. YY1 regulates skeletal muscle regeneration through controlling metabolic reprogramming of satellite cells.

ATAC-seq and RNA-seq of LncMyoD-KD MuScs

Genome Browser

Genome browser

ATAC-seq and RNA-seq of young and old MuSCs

Genome Browser

Genome browser

Alg-1 interacting protein protein 2, isoform a, partially confirmed by transcript evidence [Caenorhabditis elegans]

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AAC24251.2

Zhang L et al. 2007. Mol Cell. Systematic identification of C. elegans miRISC proteins, miRNAs, and mRNA targets by their interactions with GW182 proteins AIN-1 and AIN-2.

Bulk RNA-seq of old MuSCs and ATAC-seq and ChIP-seq of MuSCs

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GSE189074

Dong A et al. 2022. iScience. Global chromatin accessibility profiling analysis reveals a chronic activation state in aged muscle stem cells.

CPEB1 or CPEB1 (T171A, S177A) interacting proteome analysis on C2C12 cells

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PXD020822

Zeng W et al. 2022. Nat Commun. CPEB1 directs muscle stem cell activation by reprogramming the translational landscape.

Chromatin structure profiling of mouse muscle stem cells by ATAC-seq

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GSE129745

Dong A et al. 2020. Proc Natl Acad Sci U S A. A long noncoding RNA, LncMyoD, modulates chromatin accessibility to regulate muscle stem cell myogenic lineage progression.

Comprehensive Analysis of Chromatin Accessibility Changes during Muscle Stem Cell Quiescence Exit and Self-renewal

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GSE189074

Dong A et al. 2022. iScience. Global chromatin accessibility profiling analysis reveals a chronic activation state in aged muscle stem cells.

Epigenetic determinants of muscle stem cell quiescence and chronological aging

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GSE47177

Liu L et al. 2013. Cell Rep. Chromatin modifications as determinants of muscle stem cell quiescence and chronological aging.

Epigenetic determinants of muscle stem cell quiescence and chronological aging (ChIP-seq)

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GSE47362

Liu L et al. 2013. Cell Rep. Chromatin modifications as determinants of muscle stem cell quiescence and chronological aging.

FISCs (WT) RNA-seq

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GSM2893681

Chen F et al. 2019. The EMBO Journal. YY1 regulates skeletal muscle regeneration through controlling metabolic reprogramming of satellite cells.

FISCs (YY1iKO) RNA-seq

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GSM2893682

Chen F et al. 2019. The EMBO Journal. YY1 regulates skeletal muscle regeneration through controlling metabolic reprogramming of satellite cells.

Genome-wide mRNA targets of CPEB1 in muscle stem cells

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GSE148912

Zeng W et al. 2022. Nat Commun. CPEB1 directs muscle stem cell activation by reprogramming the translational landscape.

Global examination of LncMyoD binding sites using ChIRP-seq

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GSE159132

Dong A et al. 2020. Proc Natl Acad Sci U S A. A long noncoding RNA, LncMyoD, modulates chromatin accessibility to regulate muscle stem cell myogenic lineage progression.

Histone modifications in LncMyoD-KD mouse muscle stem cells and global examination of LncMyoD binding sites (ChIP-seq&ChIRP-seq)

Genome Browser

Genome broswer

Histone modifications in LncMyoD-KD mouse muscle stem cells by ChIP-seq

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GSE159131

Dong A et al. 2020. Proc Natl Acad Sci U S A. A long noncoding RNA, LncMyoD, modulates chromatin accessibility to regulate muscle stem cell myogenic lineage progression.

Histone modifications in activated and quiescent mouse muscle stem cells by ChIP-seq

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GSE129749

Dong A et al. 2020. Proc Natl Acad Sci U S A. A long noncoding RNA, LncMyoD, modulates chromatin accessibility to regulate muscle stem cell myogenic lineage progression.

Large-scale expansion of human iPSC-derived skeletal muscle cells for disease modeling and cell-based therapeutic strategies

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GSE111163

van der Wal E et al. 2018. Stem Cell Reports. Large-Scale Expansion of Human iPSC-Derived Skeletal Muscle Cells for Disease Modeling and Cell-Based Therapeutic Strategies.

Mouse muscle stem cell proteome during activation and CPEB1 dependent proteome in mouse muscle stem cell

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PXD018865

Zeng W et al. 2022. Nat Commun. CPEB1 directs muscle stem cell activation by reprogramming the translational landscape.

Next gen. sequencing of RNAs isolated from freshly isolated, proliferating and differentiating skeletal muscle stem cells

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GSE108040

Dong A et al. 2020. Proc Natl Acad Sci U S A. A long noncoding RNA, LncMyoD, modulates chromatin accessibility to regulate muscle stem cell myogenic lineage progression.

RNA-seq of immunoprecipitated Dek-associated RNA from fresh-isolated quiescent MuSCs

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GSE143412

Yue L et al. 2020. Dev Cell. Dek Modulates Global Intron Retention during Muscle Stem Cells Quiescence Exit.

RNA-sequencing analysis of quiescent and activated human skeletal muscle stem cells

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ERP011282

Gregory W et al. 2015. Stem Cell Reports. Ex Vivo Expansion and In Vivo Self-Renewal of Human Muscle Stem Cells.

STAT3 Regulates Adult Muscle Satellite Cell Maintenance During Injury-induced Muscle Regeneration

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GSE68736

Zhu H et al. 2016. Cell Rep. STAT3 Regulates Self-Renewal of Adult Muscle Satellite Cells during Injury-Induced Muscle Regeneration.

The dynamics of RNA expression level during satellite cell quiescence exit (RNA-seq)

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Genome browser

The dynamics of chromatin accessibility during satellite cell quiescence, activation, and regeneration (ATAC-seq)

Genome Browser

Genome browser

Transcriptome profiling of Dek over-expressed quiescent muscle stem cells in vivo

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GSE120799

Yue L et al. 2020. Dev Cell. Dek Modulates Global Intron Retention during Muscle Stem Cells Quiescence Exit.

Transcriptome profiling of quiescent muscle stem cells in vivo

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GSE113631

Yue L et al. 2020. Dev Cell. Dek Modulates Global Intron Retention during Muscle Stem Cells Quiescence Exit.

Transcriptome profiling of quiescent muscle stem cells in vivo (mm9)

Genome Browser

Genome browser

Transcriptome sequencing analysis of LncMyod-knockdown satellite cells by RNA-seq

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GSE129766

Dong A et al. 2020. Proc Natl Acad Sci U S A. A long noncoding RNA, LncMyoD, modulates chromatin accessibility to regulate muscle stem cell myogenic lineage progression.

Transcriptome sequencing analysis of MyoD-induced transdifferentiation in 10T1/2 fibroblasts using RNA-seq

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GSE159133

Dong A et al. 2020. Proc Natl Acad Sci U S A. A long noncoding RNA, LncMyoD, modulates chromatin accessibility to regulate muscle stem cell myogenic lineage progression.

p110α of PI3K is Indispensable for Quiescence Exit in Adult Muscle Satellite Cells

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GSE109472

Wang G et al. 2018. The EMBO Journal. p110α of PI3K is necessary and sufficient for quiescence exit in adult muscle satellite cells.